Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs17629856 | chr13:40760698 | A/C | 6.86E-8 | 65 | 64.83 | 86.07 | 16.9 | KM Plot |
| KICH | rs181300295 | chr10:86618214 | A/G | 0.00011 | 63 | 64.03 | 99 | 24.17 | KM Plot |
| KICH | rs1925252 | chr10:119565445 | T/C | 1.79E-6 | 64 | 30.67 | 10.83 | 68.13 | KM Plot |
| KICH | rs1938969 | chr11:105637994 | A/C | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
| KICH | rs2000524 | chr11:105632369 | G/A | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
| KICH | rs210193 | chr6:33481961 | C/T | 4.78E-7 | 65 | 66.1 | 53 | 16.9 | KM Plot |
| KICH | rs2155042 | chr11:105634096 | C/T | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
| KICH | rs2190809 | chr16:2880614 | T/C | 5.48E-7 | 65 | 27.2 | 74.32 | 60.5 | KM Plot |
| KICH | rs2213868 | chr1:169521553 | G/A | 7.88E-7 | 63 | 16.9 | 83.85 | 64.03 | KM Plot |
| KICH | rs28588333 | chr14:97967648 | T/C | 1.2E-6 | 63 | 67.47 | 16.9 | 28.5 | KM Plot |
| KICH | rs34525864 | chr14:91790353 | CA/C | 4.62E-6 | 64 | 66.78 | 67.1 | 26.33 | KM Plot |
| KICH | rs35228917 | chr14:91786173 | C/T | 4.65E-6 | 64 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs35378254 | chr14:91788197 | CTG/C | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs35542306 | chr2:62613171 | G/A | 7.92E-7 | 63 | 64.83 | 87.3 | 16.9 | KM Plot |
| KICH | rs35650589 | chr2:62613400 | C/A | 7.92E-7 | 63 | 64.83 | 87.3 | 16.9 | KM Plot |